Package: harrietr 0.2.4
harrietr: Wrangle Phylogenetic Distance Matrices and Other Utilities
Harriet was Charles Darwin's pet tortoise (possibly). 'harrietr' implements some function to manipulate distance matrices and phylogenetic trees to make it easier to plot with 'ggplot2' and to manipulate using 'tidyverse' tools.
Authors:
harrietr_0.2.4.tar.gz
harrietr_0.2.4.zip(r-4.5)harrietr_0.2.4.zip(r-4.4)harrietr_0.2.4.zip(r-4.3)
harrietr_0.2.4.tgz(r-4.4-any)harrietr_0.2.4.tgz(r-4.3-any)
harrietr_0.2.4.tar.gz(r-4.5-noble)harrietr_0.2.4.tar.gz(r-4.4-noble)
harrietr_0.2.4.tgz(r-4.4-emscripten)harrietr_0.2.4.tgz(r-4.3-emscripten)
harrietr.pdf |harrietr.html✨
harrietr/json (API)
NEWS
# Install 'harrietr' in R: |
install.packages('harrietr', repos = c('https://andersgs.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/andersgs/harrietr/issues
- woodmouse - Woodmouse dataset
- woodmouse_iqtree - Woodmouse IQTREE newick tree
- woodmouse_meta - Woodmouse metadata
bioinformaticsevolutionphylogenetics
Last updated 7 years agofrom:892da1e80a. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 29 2024 |
R-4.5-win | OK | Oct 29 2024 |
R-4.5-linux | OK | Oct 29 2024 |
R-4.4-win | OK | Oct 29 2024 |
R-4.4-mac | OK | Oct 29 2024 |
R-4.3-win | OK | Oct 29 2024 |
R-4.3-mac | OK | Oct 29 2024 |
Exports:dist_longget_node_supportjoin_metadatamelt_dist
Dependencies:apeaplotclicolorspacecpp11digestdplyrfansifarverfsgenericsggfunggplot2ggplotifyggtreegluegridGraphicsgtableisobandjsonlitelabelinglatticelazyevallifecyclemagrittrMASSMatrixmgcvmunsellnlmepatchworkpillarpkgconfigpurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselecttidytreetreeioutf8vctrsviridisLitewithryulab.utils
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Return evolutionary distance in long format | dist_long |
Get node support from a tree produced with IQTREE | get_node_support |
'harrietr' package | harrietr-package harrietr |
Add metadata to long distance matrix | join_metadata |
Melt a square distance matrix into long format | melt_dist |
Woodmouse dataset | woodmouse |
Woodmouse IQTREE newick tree | woodmouse_iqtree |
Woodmouse metadata | woodmouse_meta |